1b72_AB : 3D-footprint complex

structure name	PBX1, HOMEOBOX PROTEIN HOX-B1/DNA TERNARY COMPLEX
reference	Batchelor et al. 'Cell(Cambridge,Mass.)' 96 587 1999
source	HOMO SAPIENS
experiment	X-ray (resolution=2.35, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	1b72_A 1puf_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1b72_A interface=11,53,56,57,60, artfdwmkvlRtnfttrqltelekefhfnkylsrarrveiaatlelnetqvkIwfQNrrMkqkkrere > 1b72_B interface=3,48,52,55,56, rkRrnfnkqateilneyfyshlsnpypseeakeelakkcgitvsqvsNwfgNkrIRykknigkfqeeaniyaa
interface signature	RIQNM/RNNIR

Estimated binding specificities ?

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# IC=8.745 IC/col=0.972 n_of_columns=9

specificity:

A |  78   0   0  96   6   6   6  96  78
C |   6   0   0   0   6   6   6   0   6
G |   6   0  96   0   6   6  78   0   6
T |   6  96   0   0  78  78   6   0   6

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updated Fri Dec 15 08:39:21 2023