8oma_AB : 3D-footprint complex

structure name	MUTSBETA BOUND TO 61BP HOMODUPLEX DNA
reference	Thieulin-Pardo et al. 'To ? ? ?
experiment	X-ray (resolution=3.29, R-factor=?)
structural superfamily	DNA repair protein MutS, domain III;P-loop containing nucleoside triphosphate hydrolases;
reference complex	3thx_B 8ag6_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8oma_A interface=55,79,365,374,375,392,393, sigvvgvkmsqrqvgvgyvdsiqrklglcefpdndqfsnlealliqkecvlpggEtagdmgklrqiiqrggiliterkKadfstkdiyqdlnrllkgkkgeqmnsavlpemenqvavsslsavikflellsddsnfgqfelttfdfsqymkldiaavralnlfqgdttgsqslaallnkcktpqgqrlvnqwikqplmdknrieerlnlveafvedaelrqtlqedllrrfpdlnrlakkfqrqaanlqdcyrlyqginqlpnviqalekhegkhqklllavfvtpltdlrsdfskfqemiettldmdqvenheflvkpsfdpnlselreimndlekkmqstlisaardlgldpgkqikldssaQfgyyfrvtCKeekvlrnnknfstvdiQKngvkftnskltslneeytknkteyeeaqdaivkeivnissgyvepmqtlndvlaqldavvsfahvsngapvpyvrpailekgqgriilkasrhacvevqdeiafipndvyfekdkqmfhiitgpnmggkstyirqtgvivlmaqigcfvpcesaevsivdcilarvgagdsqlkgvstfmaemletasilrsatkdsliiidelgrgtstydgfglawaiseyiatkigafcmfathfheltalanqiptvnnlhvtaltteetltmlyqvkkgvcdqsfgihvaelanfpkhviecakqkaleleefqyeqgekiiqeflskvkqmpftemseenitiklkqlkaeviaknnsfvneiisrikvtt > 8oma_B interface=88,91, mefmtingttlrnleilqnqtdmktkgsllwvldhtktsfgrrklkkwvtqpllklreinarldavsevlhsssvfgqienhlrklpDieRglcsiyhkkcstqefflivktlyhlksefqaiipavnshiqsdllrtvileipellspvehylkilneqaakvgdktelfkdlsdfplikkrkdeiqgvideirmhlqeirkilknpsaqyvtvsgqefmieiknsavsciptdwvkvgstkavsrfhspfivenyrhlnqlreqlvldcsaewldflekfsehyhslckavhhlatvdcifslakvakqgdycrptvqeerkivikngrhpvidvllgeqdqyvpnntdlsedservmiitgpnmggkssyikqvalitimaqigsyvpaeeatigivdgiftrmgaadniykgrstfmeeltdtaeiirkatsqslvildelgrgtsthdgiaiayatleyfirdvksltlfvthyppvceleknyshqvgnyhmgflvsdfvtflyqitrgiaarsyglnvakladvpgeilkkaahkskeleglintkrkrlkyfaklwtmhnaqdlqkwte
interface signature	EKQCKQK/DR

Estimated binding specificities ?

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# IC=8.745 IC/col=0.583 n_of_columns=15

specificity:

A |   0  24  24  24  78  24  24  24   6  78   0   0   0   6  78
C |  96  24  24  24   6  24  24  24   6   6   0  96   0   6   6
G |   0  24  24  24   6  24  24  24   6   6  96   0   0   6   6
T |   0  24  24  24   6  24  24  24  78   6   0   0  96  78   6

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updated Mon Dec 18 02:05:05 2023