8ifo_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF ESTROGEN RELATED RECEPTOR-GAMMA DNA BINDING DOMAIN COMPLEXED WITH PLA2G12B PROMOTER
reference	Zhen et al. Biochem.Biophys.Res.Commun. 656 16 2023
source	Homo sapiens
experiment	X-ray (resolution=2.20, R-factor=?)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
reference complex	1lo1_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 8ifo_A interface=22,25,26,29,30,75, krlclvcgdiasgyhygvascEacKAffKRtiqgnieyscpatneceitkrrrkscqacrfmkclkvgmlkegvRl > 8ifo_B interface=23,26,27,30,31, pkrlclvcgdiasgyhygvascEacKAffKRtiqgnieyscpatneceitkrrrkscqacrfmkclkvgmlkegvrldrv
interface signature	EKAKRR/EKAKR

Estimated binding specificities ?

readout + contact

# IC=7.898 IC/col=0.790 n_of_columns=10

specificity:

A |   0   0  61   0  72  24  24   0   0   8
C |   0   0   8  96   8  24  24   0   0   8
G |  96  96  17   0   8  24  24  96  96  19
T |   0   0  10   0   8  24  24   0   0  61

scan!

home
updated Mon Dec 18 01:00:42 2023