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legend  pdf

structure nameCRYSTAL STRUCTURE OF KOD DNA POLYMERASE IN A BINARY COMPLEX WITH HYPOXANTHINE CONTAINING TEMPLATE
(DNA POLYMERASE,DNA POLYMERASE,DNA POLYMERASE)
referenceDiederichs et al. Chembiochem 22 3060 2021
sourceTHERMOCOCCUS KODAKARENSIS KOD1
experimentX-ray (resolution=1.92, R-factor=0.184)
structural superfamilyDNA/RNA polymerases;Ribonuclease H-like;
sequence familyDNA polymerase family B; DNA polymerase family B, exonuclease do;
redundant complexes4k8z_A 5omf_A 5vu6_A 5vu7_A 5vu8_A 5vu9_A 6q4t_A 6wya_A 6wyb_A 7omb_A 7omg_A 7rsr_A 7rss_A 7rsu_A 7tqw_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureYYKR

Estimated binding specificities ?

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# IC=2.295 IC/col=0.574 n_of_columns=4 specificity:   
A |   7   7   7   9
C |   7   7   9  73
G |   9  75  73   7
T |  73   7   7   7
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Dendrogram of similar interfaces ?

matrix format

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updated Tue Dec 19 19:26:25 2023