6xgx_AB : 3D-footprint complex

structure name	ISCTH4 TRANSPOSASE, STRAND TRANSFER COMPLEX 1, STC1
reference	Kosek et al. 'Embo 40 e105666 2021
experiment	X-ray (resolution=3.50, R-factor=?)
structural superfamily	Ribonuclease H-like;
reference complex	6xg8_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6xgx_A interface=54,64,66,68,69,86,100,102,121,122,137,138,139,140,142,177,357,358,360, iitpekkelirnliseynitsakdlqealkdllgdtiqnmleaeldehlgyekYesteeaksnYrNgYTsktlkssvgqveidipRdrnaefepkivprYkRdiseienkiiamyargmsTReineqiqeiygfevSAEMvSkitdkilpeieewqkrplgevypivfidaihfsvKndgivgkkavyivlaidiegqkdvigiyvgenesskfwlsvlndlknrgvkdililcadalsgikdainaafpnteyqrcivhqirntlkyvsdkdrkefardlkriytapnekagydqmlevsekwekkypaamkswksnwdvicpffkyseelrkimyttntieslnssyrrinksrTVfPgdqsllksiylatvkitskwtmryknwglilgqlqimfegri > 6xgx_B interface=293, arkriitpekkelirnliseynitsakdlqealkdllgdtiqnmleaeldehlgrdiseienkiiamyargmstreineqiqeiygfevsaemvskitdkilpeieewqkrplgevypivfidaihfsvkndgivgkkavyivlaidiegqkdvigiyvgenesskfwlsvlndlknrgvkdililcadalsgikdainaafpnteyqrcivhqirntlkyvsdkdrkefardlkriytapnekagydqmlevsekwekkypaamkswksnwdvicpffkyseelrkimyttNtieslnssyrrinksrtvfpgdqsllksiylatvkitskwtmryknwglilgqlqimfegri
interface signature	YYNYTRYRTRSAEMSKTVP/N

Estimated binding specificities ?

readout + contact

# IC=19.329 IC/col=0.840 n_of_columns=23

specificity:

A |   0   0   4  88   4  96  10  90  73  69  24  24  24  24   0   0   0  96   0  96   8  24   0
C |   0   0   2   2  88   0  64   0   5   9  24  24  24  24   0   0   0   0  96   0  72  24   0
G |   0   0   2   4   2   0  12   4   8   8  24  24  24  24   0   0   0   0   0   0   8  24  96
T |  96  96  88   2   2   0  10   2  10  10  24  24  24  24  96  96  96   0   0   0   8  24   0

scan!

home
updated Sat Dec 16 22:05:42 2023