interface graph thumbnail
legend  pdf

structure nameSTRUCTURE OF TBP BOUND TO C-C MISMATCH CONTAINING TATA SITE
(TATA-box-binding protein 1)
referenceSchumacher et al. Nature 587 291 2020
sourceArabidopsis thaliana
experimentX-ray (resolution=2.40, R-factor=0.215)
structural superfamilyTATA-box binding protein-like;
sequence familyTranscription factor TFIID or TATAbinding;
multimeric complexes1vol_AB
reference complex1qna_B
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureNVFALFVTNVFPLFVT

Estimated binding specificities ?

contactlogo
# IC=8.012 IC/col=1.002 n_of_columns=8 specificity:   
A |   1   0  10   0   0  96   0  64
C |  85   0  10   1   0   0   0  10
G |  10   0  12  10   0   0   0  12
T |   0  96  64  85  96   0  96  10
scan!

home
updated Mon Dec 18 18:22:45 2023