1vol_AB : 3D-footprint complex

structure name	TFIIB (HUMAN CORE DOMAIN)/TBP (A.THALIANA)/TATA ELEMENT TERNARY COMPLEX
reference	Nikolov et al. Nature 377 119 1995
source	HOMO SAPIENS / ARABIDOPSIS THALIANA
experiment	X-ray (resolution=2.70, R-factor=?)
structural superfamily	Cyclin-like;TATA-box binding protein-like;
reference complex	1c9b_M 1qna_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1vol_A interface= ammnafkeittmadrinlprnkvdrtnnlfrqayeqkslkgrandaiasaclyiacrqegvprtfkeicavsriskkeigrcfklilkaletsvdlittgdfmsrfcsnlclpkqvqmaathiarkaveldlvpgrspisvaaaaiymasqasaekrtqkeigdiagvadvtirqsyrliyprapdlfptdfkfdtpvdklpql > 1vol_B interface=16,18,46,61,63,69,71,106,108,137,138,152,154,160,162, vdlskhpsgivptlqNiVstvnldckldlkaialqarnaeynpkrFaavimrirepkttaLiFasgkmVcTgaksedfskmaarkyarivqklgfpakfkdfkiqNiVgscdvkfpirleglayshaafssyepelFPgliyrmkvpkivlLiFvsgkiViTgakmrdetykafeniypvlsefrki
interface signature	/NVFLFVTNVFPLFVT

Estimated binding specificities ?

readout + contact

# IC=9.580 IC/col=0.958 n_of_columns=10

specificity:

A |  12  24   0  96   0  96  96  60  96   0
C |  12  24   0   0   0   0   0  12   0  12
G |  60  24   0   0   0   0   0  12   0  84
T |  12  24  96   0  96   0   0  12   0   0

scan!

home
updated Fri Dec 15 11:15:02 2023