interface graph thumbnail
legend  pdf

structure nameSTRUCTURE OF A. THALIANA TBP-AC MISMATCH DNA SITE
(TATA-box-binding protein 1)
referenceNature 587 291 2020 X-RAY DIFFRACTION
sourceArabidopsis thaliana
experimentX-ray (resolution=2.00, R-factor=0.215)
structural superfamilyTATA-box binding protein-like;
sequence familyTranscription factor TFIID or TATAbinding;
multimeric complexes1vol_AB
reference complex1qna_B
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureNVFLFVTNVFPLFVT

Estimated binding specificities ?

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# IC=6.983 IC/col=0.873 n_of_columns=8 specificity:   
A |   1  96   5  85  85  75  80   5
C |   0   0   6   5   5   5   5  10
G |   5   0   5   6   0   5   6  75
T |  90   0  80   0   6  11   5   6
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updated Mon Dec 18 18:22:31 2023