6qtp_ABCD : 3D-footprint complex

structure name	2.37A STRUCTURE OF GEPOTIDACIN WITH S.AUREUS DNA GYRASE AND UNCLEAVED DNA
reference	'Acs 5 570 2019 Escherichia coli
source	STAPHYLOCOCCUS AUREUS
experiment	X-ray (resolution=2.37, R-factor=?)
structural superfamily	Type II DNA topoisomerase;
reference complex	5iwi_C 5iwi_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6qtp_A interface=74,75,165, ernitsemresfldyamsvivaralpdvrdglkpvhrrilyglneqgmtpdksykksarivgdvmgkyhphgdSSiyeamvrmaqdfsyryplvdgqgnfgsmdgdgaaamrytearmtkitlellrdinkdtidfidnydgnerepsvlparfpnllangasgIavgmatnipphnltelingvlslsknpdisiaelmediegpdfptaglilgksgirrayetgrgsiqmrsravierqrivvteipfqvnkarmiekiaelvrdkkidgitdlrdetslrtgvrvvidvrkasvilnnlykqtplqtsfgvnmialvngrpklinlkealvhylehqktvvrrrtqynlrkakdrahileglrialdhideiistiresdtdkvameslqqrfklsekqaqaildmrlrrltglerdkieaeynellnyiseletiladeevllqlvrdelteirdrfgddrrteiqlg > 6qtp_B interface=43,45, gkladcsskspeeceiflvegdsaggstksgrdsrtqailplRgKilnvekarldrilnnneirqmitafgtgiggdfdlakaryhkivimtdadvdgahirtllltffyrfmrplieagyvyiaqppykglgemnadqlwettmnpehrallqvkledaieadqtfemlmgdvvenrrqfiednavya > 6qtp_C interface=16,76,79,166, nernitsemresfldYamsvivaralpdvrdglkpvhrrilyglneqgmtpdksykksarivgdvmgkyhphgdsSiyEamvrmaqdfsyryplvdgqgnfgsmdgdgaaamrytearmtkitlellrdinkdtidfidnydgnerepsvlparfpnllangasgIavgmatnipphnltelingvlslsknpdisiaelmediegpdfptaglilgksgirrayetgrgsiqmrsravieergggrqrivvteipfqvnkarmiekiaelvrdkkidgitdlrdetslrtgvrvvidvrkdanasvilnnlykqtplqtsfgvnmialvngrpklinlkealvhylehqktvvrrrtqynlrkakdrahileglrialdhideiistiresdtdkvameslqqrfklsekqaqaildmrlrrltglerdkieaeynellnyiseletiladeevllqlvrdelteirdrfgddrrteiql > 6qtp_D interface=44, kladcsskspeeceiflvegdsaggstksgrdsrtqailplrgKilnvekarldrilnnneirqmitafgtgiggdfdlakaryhkivimtdadvdgahirtllltffyrfmrplieagyvyiaqpptgykglgemnadqlwettmnpehrallqvkledaieadqtfemlmgdvvenrrqfiednavya
interface signature	SSI/RK/YSEI/K

Estimated binding specificities ?

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# IC=8.100 IC/col=0.579 n_of_columns=14

specificity:

A |   0   0   7  62  11  24  24  24  24  11  16  24   0   0
C |  96   0  84  11  62  24  24  24  24   1  13  24  96   0
G |   0  96   0  11  12  24  24  24  24  84  11  24   0  96
T |   0   0   5  12  11  24  24  24  24   0  56  24   0   0

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updated Sat Dec 16 16:38:45 2023