3D-footprint cannot reliably estimate the specificity of 'Nucleic acid-binding proteins', as they bind to single-stranded DNA and thus accumulate more base contacts.
Dendrogram of similar interfaces ?
matrix formatstructure name | CRYSTAL STRUCTURE OF YEAST CDC13 AND SSDNA (KLLA0F20922P) |
reference | Lei et al. Nat.Struct.Mol.Biol. 27 752 2020 |
source | KLUYVEROMYCES LACTIS |
experiment | X-ray (resolution=2.50, R-factor=0.204) |
structural superfamily | Nucleic acid-binding proteins; |
sequence family | CDC13, ssDNA binding; |
links to other resources | NAKB PDIdb DNAproDB |
FGFGATKTKTFTYT--------NTYT--YADGFGSGFGRGET--HALTYTNTRT--------ITMTDTKTNGRGKTQGFGKANTVTLT--------EALATGRT--FGDGNGTGYGQGRT---- L +------------------------6lbr_A +---2 --------------KGWGYC--FA--MA------SGRG------RTIG------WGDG------------------------------------------------------------------ L ! ! +---------------4hja_A --3 +--------1 --------------------------------------------------------------------------------------------------------YG--------------NGHG ! +---------------3u58_C ! ----------------KTTTAT--------------------FT--RTFT--------ITYT------------------RT------QTFTDTKT---------------------------- L +----------------------------2vw9_A |
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updated Fri Sep 13 22:32:25 2024