interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF ARABIDOPSIS THALIANA VAL1 IN COMPLEX WITH FLC DNA FRAGMENT
(B3 domain-containing transcription repressor VAL1)
referenceHu et al. Nat.Plants 5 424 2019
sourceArabidopsis thaliana
experimentX-ray (resolution=2.92, R-factor=0.206)
structural superfamilyDNA-binding pseudobarrel domain;
sequence familyB3 DNA binding domain;
reference complex6fas_B
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureSRVWNNM

Estimated binding specificities ?

readout + contactlogo
# IC=4.730 IC/col=0.788 n_of_columns=6 specificity:   
A |  18   2   0  75   3   4
C |  18   2  96   7   3   7
G |  18  88   0   7   3  81
T |  42   4   0   7  87   4
scan!

home
updated Mon Dec 18 15:38:03 2023