6fws_A : 3D-footprint complex

structure name	STRUCTURE OF DING IN COMPLEX WITH SSDNA AND ADPBEF (ATP-dependent DNA helicase DinG)
reference	Wigley et al. Elife 7 ? 2018
source	Escherichia coli
experiment	X-ray (resolution=2.50, R-factor=0.221)
structural superfamily	P-loop containing nucleoside triphosphate hydrolases;
redundant complexes	6fwr
reference complex	6fwr_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6fws_A interface=211,245,528,600,601,602,619,621,622,625, maltaalkaqiaawykalqeqipdfiprapqrqmiadvaktlageegrhlaieaptgvgktlsylipgiaiareeqktlvvstanvalqdqiyskdlpllkkiipdlkftaafgrgryvcprnltalasteptqqdllaflddeltpnnqeeqkrcaklkgdldtykwdglrdhtdiaidddlwrrlstecpffvarreiqeaevvvanhAlvmaameseavlpdpknlllvldeghhlpdvarDalemsaeitapwyrlqldlftklvatcmeqfrpktipplaiperlnahceelyeliaslnnilnlympagqeaehrfamgelpdevleicqrlakltemlrglaelflndlsektdivrlhrlilqmnralgmfeaqsklwrlaslaqssgapvtkwatreeregqlhlwfhcvgirvsdqlerllwrsiphiivtsatlrslnsfsrlqemsglkekagdrfvaldspfnhceqgkiviprmrvepsidneeqhiaemaaffreqveskkhlgmlvlfasgRamqrfldyvtdlrlmllvqgdqpryrlvelhrkrvangersvlvglqsfaegldlkgdllsqvhihkiafpPIDspvvitegewlkslnrYpFEvqSlpsasfnliqqvgrlirshgcwgevviydkrlltknygkrlldalpvfpieqpevpegivk
interface signature	ADRPIDYFES

Estimated binding specificities ?

contact

# IC=5.938 IC/col=1.188 n_of_columns=5

specificity:

A |   0   0   7   0   0
C |   0   0   7   0   0
G |   0   0   7   0   0
T |  96  96  75  96  96

scan!

Dendrogram of similar interfaces ?

matrix format

  
  ATDT--RT----PTITDTYT--FTETST--   L            +-----------------6fws_A    
                                         +------2 
  ------------YGTAQT--EA--NALARC         !      +-----------------7ad8_B    
                                       +-3 
  ----------KGHC----------------       ! !                       +7nvv_7    
                                     --4 +-----------------------1 
  ----------KGHA----------------       !                         +7o4j_7    
                                       ! 
  ----RG--TT--------------------       +--------------------------7oob_b

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updated Mon Dec 18 15:15:14 2023