6fb0_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF A TAILORED I-CREI HOMING ENDONUCLEASE PROTEIN (3115 VARIANT) IN COMPLEX WITH ITS TARGET DNA (HAEMOGLOBIN BETA SUBUNIT GENE) IN THE PRESENCE OF CALCIUM
reference	Molina et al. 'Sci 8 10286 2018
source	CHLAMYDOMONAS REINHARDTII
experiment	X-ray (resolution=2.15, R-factor=?)
structural superfamily	Homing endonucleases;
reference complex	6fb0_A 6fb0_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6fb0_A interface=21,23,25,27,29,31,37,39,43,45,65,67,69,72,74,76,138,139, ntkynkefllylagfvdsdgSiIaQiKpNqSvkfkhRlQltfDvTqktqrrwfldklvdeigvgYvAdSgsVsKyRlseikplhnfltqlqpflklkqkqanlvlkiieqlpsakespdkflevctwvdqiaalndsKTrkttsetvravlds > 6fb0_B interface=21,23,25,27,31,37,43,45,67,69,72,74,76,138,139, ntkynkefllylagfvdgdgSiIaQiKpnqSgkfkhKlsltfKvTqktqrrwfldklvdeigvgyvYdSgsVsNyYlseikplhnfltqlqpflklkqkqanlvlkiieqlpsakespdkflevctwvdqvaalndsKTrkttsetvravldsl
interface signature	SIQKNSRQDTYASVKRKT/SIQKSKKTYSVNYKT

Estimated binding specificities ?

readout + contact

# IC=22.127 IC/col=1.006 n_of_columns=22

specificity:

A |   0   0  79   0   0   0   0   0  11  24  24   0  91   0  96  96   0  24   0   0   0  79
C |   0   0   5  96   0  96  96   0   5  24  24   5   0   0   0   0   0  24  96   0  12   5
G |   0  96   7   0   0   0   0   0  67  24  24  91   5  96   0   0  96  24   0   0  73   7
T |  96   0   5   0  96   0   0  96  13  24  24   0   0   0   0   0   0  24   0  96  11   5

scan!

home
updated Sat Dec 16 10:22:50 2023