| structure name | STRUCTURE OF HUMAN DNA POLYMERASE KAPPA WITH DNA (DNA POLYMERASE KAPPA) |
| reference | Ling et al. 'Sci 8 15125 2018 |
| source | HOMO SAPIENS |
| experiment | X-ray (resolution=2.00, R-factor=0.199) |
| structural superfamily | DNA/RNA polymerases;Lesion bypass DNA polymerase Y-family, little finger domain; |
| sequence family | impB/mucB/samB family; |
| redundant complexes | 2oh2_B 2w7o_A 2w7p_A 3in5_B 3pzp_B 4u6p_B 4u7c_A 5t14_B 5w2a_B 5w2c_A 6brx_B 6bs1_B |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence |
No structural evidence for specific binding to DNA (<4 informative columns)
Dendrogram of similar interfaces ?
matrix formatRTMCICTCFC----MA--MT------ATPCFAIC------------------STEG----------------TC--------RT +------6cst_A +-----------6 ------------------VGTG----------------------------------------RT----FT--------RT--RT ! +------6jum_A ! ------------------AC----AG------------------------ST--YG------RG----LC----------RCKT ! +4f4z_A ! +-1 ------------------AG--------PCIAKAQA------------KC----YC------------LC--ST------RC-- ! +-2 +4f4y_B +-8 ! ! ------------------AGAG------PC------MG----------------IC--------HA--LC--ST------RGRG ! ! +-3 +4f4w_A ! ! ! ! ------------------VASA----AAPT--MT--------------------EG------RT----FT--------RT---- ! ! +----------5 +5yuy_A ! ! ! ! ----------FCYC--------TTAT------------SCICDCEC----ST--------------------SG------RCRT +-----9 ! ! ! +-4tqr_A ! ! +-----7 +-4 ------------------EG--------FG------------------------ET--YG------HG---------------- ! ! ! +-3gqc_A ! ! ! ----------------ST----------WG--------------------------DT--------MG---------------- +-10 ! +------------6x6z_A ! ! ! ------------YG----------------------------------------EG--------RA--------QA-------- ! ! +------------------3osn_A +-11 ! ----------------------------------------------------MANG------------YA--RC--ST------ ! ! +------------------------3mfi_A +-12 ! ----------------------------------------------RG------------------------------------ ! ! +-------------------------5tw1_T +-13 ! ----------------------------------------------RA------------------------------------ ! ! +--------------------------6b6h_I -14 ! --------------------IT--RTST--------------------------ST----TA--------LT------------ ! +---------------------------5kfz_A ! ----------------------------------------------RT------------------------------------ +----------------------------5vi8_T |
home
updated Tue Dec 19 12:27:57 2023