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structure nameSTRUCTURAL MECHANISM OF ERROR-FREE BYPASS OF MAJOR BENZO[A]PYRENE ADDUCT BY HUMAN POLYMERASE KAPPA
(DNA polymerase kappa)
referenceJha et al. 'Nucleic 44 4957 2016
sourceHomo sapiens
experimentX-ray (resolution=2.59, R-factor=0.201)
structural superfamilyDNA/RNA polymerases;Lesion bypass DNA polymerase Y-family, little finger domain;
sequence familyimpB/mucB/samB family;
redundant complexes2w7o 4u7c 2oh2 5t14 3pzp 3in5 2w7p
reference complex6cst_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence

No structural evidence for specific binding to DNA (<4 informative columns)


Dendrogram of similar interfaces ?

matrix format
  
  TTSTFT--------MAMG------AGPTFAIT--------------------ET--------KT------------------                           +------4u6p_B    
                                                                                                               ! 
  ----------VG----AGAG------PC------MG----------------IC------HA----LC--ST------RGRG                           !        +4f4w_A    
                                                                                                       +-------7      +-1 
  ----------VG----AG--------PCIAKAQA------------KC----YC------------LC--ST------RC--                   !       !    +-2 +4f4y_B    
                                                                                                       !       !    ! ! 
  ----------------AC----AG------------------------ST--YG----RG------LC----------RCKT                   !       +----3 +4f4z_A    
                                                                                                     +-8            ! 
  ----------------VASA----AAPT--MT--------------------EG----RT------FT--------RT----                 ! !            +-5c5j_A    
                                                                                                     ! ! 
  ------FCYC----------TTAT------------SCICDCEC----ST--------------------SG------RCRT                 ! !            +-4tqr_A    
                                                                                                     ! !          +-4 
  ----------------EG--------FG------------------------ETYG--------HG----------------           +-----9 +----------5 +-3gqc_A    
                                                                                               !     !            ! 
  ------------HA------------WG------------------------DTWA--------MG----------------           !     !            +---2aq4_A    
                                                                                               !     ! 
  --------YG------------------------------------------EG------RA----------QA--------       +--10     !          +----3osn_A    
                                                                                           !   !     +----------6 
  ------------------IT--RTST--------------------------ST--TA----------LT------------       !   !                +----5kfz_A    
                                                                                         -11   !  
  --------------------------------------------------MANG------------YA--RC--ST------       !   +---------------------3mfi_A    
                                                                                           !  
  --------------------------------------------RT------------------------------------       +-------------------------5vi8_T    
                                                                                         

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updated Mon Dec 18 11:21:56 2023