structure name | STRUCTURAL MECHANISM OF ERROR-FREE BYPASS OF MAJOR BENZO[A]PYRENE ADDUCT BY HUMAN POLYMERASE KAPPA (DNA polymerase kappa) |
reference | Jha et al. 'Nucleic 44 4957 2016 |
source | Homo sapiens |
experiment | X-ray (resolution=2.59, R-factor=0.201) |
structural superfamily | DNA/RNA polymerases;Lesion bypass DNA polymerase Y-family, little finger domain; |
sequence family | impB/mucB/samB family; |
redundant complexes | 2w7o 4u7c 2oh2 5t14 3pzp 3in5 2w7p |
reference complex | 6cst_A |
links to other resources | NAKB PDIdb DNAproDB |
protein sequence |
No structural evidence for specific binding to DNA (<4 informative columns)
Dendrogram of similar interfaces ?
matrix formatTTSTFT--------MAMG------AGPTFAIT--------------------ET--------KT------------------ +------4u6p_B ! ----------VG----AGAG------PC------MG----------------IC------HA----LC--ST------RGRG ! +4f4w_A +-------7 +-1 ----------VG----AG--------PCIAKAQA------------KC----YC------------LC--ST------RC-- ! ! +-2 +4f4y_B ! ! ! ! ----------------AC----AG------------------------ST--YG----RG------LC----------RCKT ! +----3 +4f4z_A +-8 ! ----------------VASA----AAPT--MT--------------------EG----RT------FT--------RT---- ! ! +-5c5j_A ! ! ------FCYC----------TTAT------------SCICDCEC----ST--------------------SG------RCRT ! ! +-4tqr_A ! ! +-4 ----------------EG--------FG------------------------ETYG--------HG---------------- +-----9 +----------5 +-3gqc_A ! ! ! ------------HA------------WG------------------------DTWA--------MG---------------- ! ! +---2aq4_A ! ! --------YG------------------------------------------EG------RA----------QA-------- +--10 ! +----3osn_A ! ! +----------6 ------------------IT--RTST--------------------------ST--TA----------LT------------ ! ! +----5kfz_A -11 ! --------------------------------------------------MANG------------YA--RC--ST------ ! +---------------------3mfi_A ! --------------------------------------------RT------------------------------------ +-------------------------5vi8_T |
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updated Mon Dec 18 11:21:56 2023