6c2s_BC : 3D-footprint complex

structure name	TRANSCRIPTIONAL REPRESSOR, COUR, BOUND TO A 23-MER DNA DUPLEX
reference	Cogan et al. 'J. 293 11727 2018
source	Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) / Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) / Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) / Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)
experiment	X-ray (resolution=2.85, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	6c2s_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6c2s_B interface=65,66,67,68,70,92, selkmgelsellgyalkraqlrvfedflhcvapvqltpaqfsvlllldanpgrnqteiattlgiLRPNfVamldalegrglcvrtrspsdrRshilmltdkgratlarakklvatrhedrltellgrdnrdallsmlatiar > 6c2s_C interface=65,66,67,68,70,92, selkmgelsellgyalkraqlrvfedflhcvapvqltpaqfsvlllldanpgrnqteiattlgiLRPNfVamldalegrglcvrtrspsdrRshilmltdkgratlarakklvatrhedrltellgrdnrdallsmlatiar
interface signature	LRPNVR/LRPNVR

Estimated binding specificities ?

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# IC=14.936 IC/col=0.711 n_of_columns=21

specificity:

A |  75   3  24  24   0  19  96   0  96  24  24  24   0  96   1  73  96  24  24  96   3
C |   3   0  24  24   0   6   0   0   0  24  24  24   0   0  10  17   0  24  24   0   5
G |  13   3  24  24   0  20   0   0   0  24  24  24   4   0   0   3   0  24  24   0   3
T |   5  90  24  24  96  51   0  96   0  24  24  24  92   0  85   3   0  24  24   0  85

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updated Sat Dec 16 08:37:00 2023