6c2s_AD : 3D-footprint complex

structure name	TRANSCRIPTIONAL REPRESSOR, COUR, BOUND TO A 23-MER DNA DUPLEX
reference	Cogan et al. 'J. 293 11727 2018
source	Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) / Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) / Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) / Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)
experiment	X-ray (resolution=2.85, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	6c2s_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6c2s_A interface=65,66,67,68,70,92, selkmgelsellgyalkraqlrvfedflhcvapvqltpaqfsvlllldanpgrnqteiattlgiLRPNfVamldalegrglcvrtrspsdrRshilmltdkgratlarakklvatrhedrltellgrdnrdallsmlatiar > 6c2s_D interface=65,66,67,68,70,92, selkmgelsellgyalkraqlrvfedflhcvapvqltpaqfsvlllldanpgrnqteiattlgiLRPNfVamldalegrglcvrtrspsdrRshilmltdkgratlarakklvatrhedrltellgrdnrdallsmlatiar
interface signature	LRPNVR/LRPNVR

Estimated binding specificities ?

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# IC=14.359 IC/col=0.684 n_of_columns=21

specificity:

A |  73   2  24  24   0   8  88   0  93  24  24  24   1  96   0  79  67  24  24  94   0
C |   2   2  24  24   0   9   4   0   3  24  24  24   2   0   0  12  10  24  24   0   0
G |  12   2  24  24   0  12   2   0   0  24  24  24   2   0   0   2   7  24  24   2   3
T |   9  90  24  24  96  67   2  96   0  24  24  24  91   0  96   3  12  24  24   0  93

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updated Sat Dec 16 08:36:47 2023