interface graph thumbnail
legend  pdf

structure nameMBD2 IN COMPLEX WITH DOUBLE-STRANDED DNA
(Methyl-CpG-binding domain protein 2)
referenceStructural Genomics Consortium (SGC)
sourceHomo sapiens
experimentX-ray (resolution=2.30, R-factor=0.234)
structural superfamilyDNA-binding domain;
sequence familyMethylCpG binding domain;
multimeric complexes6c1a_AB 6c1a_EF 6c1t_AD 6c1u_AB 6c1u_EF 6c1v_AB 6c1v_EF
reference complex6c1t_D
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRDYKR

Estimated binding specificities ?

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# IC=2.155 IC/col=0.539 n_of_columns=4 specificity:   
A |  11  96  12  18
C |  67   0  60  18
G |   9   0  12  18
T |   9   0  12  42
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updated Mon Dec 18 14:36:54 2023