interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameTHE CRYSTAL STRUCTURE OF THE NUCLEOSOME CONTAINING HISTONE H3.1 CATD(V76Q, K77D)
(HISTONE H3.1,HISTONE H3-LIKE CENTROMERIC PROTEIN A,HISTONE...)
referenceKurumizaka et al. 'Nat 10 576 2019
sourceHOMO SAPIENS
experimentX-ray (resolution=2.58, R-factor=0.215)
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes5z23_ABCDEFGH 5zbx_ABCDEFGH
redundant complexes5z23
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  --RG----------RT                                    +7zs9_e    
                            +-------------------------2 
  --RG------------          !                         +6a5l_e    
                         +--8 
  --RGYA--------RT       !  ! +--------------------------7wlr_E    
                         !  ! ! 
  HTRG--RA--------       !  +-7 +-------------------------7nky_e    
                         !    ! ! 
  ----------IT--RA       !    +-6                  +------7k78_E    
                         !      !     +------------3 
  --------RAETRT--     --9      !     !            +------4ne1_p    
                         !      +-----5 
  --------------RA       !            !                   +6t7a_C    
                         !            !    +--------------1 
  --------------RT       !            +----4              +7lyb_G    
                         !                 ! 
  --------------RT       !                 +--------------1u35_G    
                         ! 
  --RG----------RT       +-----------------------------7lya_E    
                       

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updated Tue Dec 19 12:06:37 2023