3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

home
updated Sat Dec 16 07:39:24 2023

structure name	CRYSTAL STRUCTURE OF THE NUCLEOSOME CONTAINING A CHIMERIC HISTONE H3/CENP-A CATD
reference	Tachiwana et al. 'Nat 10 576 2019
source	HOMO SAPIENS
experiment	X-ray (resolution=2.73, R-factor=?)
structural superfamily	Histone-fold;PH domain-like;lambda repressor-like DNA-binding domains;p53-like transcription factors;
reference complex	5gtc_H 5o9g_F 5z23_C 5zbx_A 6a5l_d 6buz_H 6c0w_H 6ftx_B 6r8y_H 6see_H 6t7a_H 6upk_H 6x59_H 6y5d_H 7d1z_H 7e8d_H 7k5x_H 7k60_H 7k63_H 7nkx_f 7pet_H 7scy_H 7u0g_M 7vdt_B 7xcr_F 7xzx_N 7xzz_N 8h0v_h 8t9f_F
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5z23_A interface=3,28, phRyrpgtvalreirryqkstellirkLpfqrlvreicvkftrgvdfnwqaqallalqeaaeaflvhlfedaylltlhakrvtimpkdiqlarrirger > 5z23_B interface=23, rdniqgitkpairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygf > 5z23_C interface=31, akaktrssraglqfpvgrvhrllrkgnyseRvgagapvymaavleymtaeilelagnaardnkktriiprhlqlairndeemnkllgrvtiaqggvlpniqavllp > 5z23_D interface=2,8, sRkesysIyvykvlkqvhpdtgisskamgimnsfvndiferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkyts > 5z23_E interface=3,28, phRyrpgtvalreirryqkstellirkLpfqrlvreicvkftrgvdfnwqaqallalqeaaeaflvhlfedaylltlhakrvtimpkdiqlarrirgera > 5z23_F interface=27, rkvlrdniqgitkpairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg > 5z23_G interface=63, ktrssraglqfpvgrvhrllrkgnyservgagapvymaavleymtaeilelagnaardnkktRiiprhlqlairndeemnkllgrvtiaqggvlpniqavllpk > 5z23_H interface= rkesysiyvykvlkqvhpdtgisskamgimnsfvndiferiageasrlahynkrstitsreiQtavrlllpgelakhavsegtkavtkytsa