5xxp_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF CBNR_DBD-DNA COMPLEX
reference	Senda et al. 'FEBS 285 977 2018
source	Cupriavidus necator
experiment	X-ray (resolution=2.55, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	5xxp_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5xxp_A interface=28,29,30,31,33,34,52, mefrqlkyfiavaeagnmaaaakrlhvSQPPiTRqmqaleadlgvvllersHrgieltaaghafledarrilelagrsgdrsraaar > 5xxp_B interface=28,29,30,31,33,34,52, mefrqlkyfiavaeagnmaaaakrlhvSQPPiTRqmqaleadlgvvllersHrgieltaaghafledarrilelagrsgdrsraaar
interface signature	SQPPTRH/SQPPTRH

Estimated binding specificities ?

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# IC=10.570 IC/col=0.556 n_of_columns=19

specificity:

A |   0  12  96   0  12  24  24  24  24  24   9   0   3  87  84  24  24  24   3
C |   0   9   0  96   9  24  24  24  24  24  60   0   3   3   0  24  24  24   3
G |   0   0   0   0  66  24  24  24  24  24  12  96   3   3   0  24  24  24   3
T |  96  75   0   0   9  24  24  24  24  24  15   0  87   3  12  24  24  24  87

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updated Sat Dec 16 07:26:21 2023