5xxp_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF CBNR_DBD-DNA COMPLEX (LysR-type regulatory protein)
reference	Senda et al. 'FEBS 285 977 2018
source	Cupriavidus necator
experiment	X-ray (resolution=2.55, R-factor=0.222)
structural superfamily	"Winged helix" DNA-binding domain;
sequence family	Bacterial regulatory helixturnhelix protei;
multimeric complexes	5xxp_AB
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5xxp_A interface=28,29,30,31,33,34,52, mefrqlkyfiavaeagnmaaaakrlhvSQPPiTRqmqaleadlgvvllersHrgieltaaghafledarrilelagrsgdrsraaar
interface signature	SQPPTRH

Estimated binding specificities ?

contact

# IC=6.247 IC/col=0.625 n_of_columns=10

specificity:

A |   7   0   0  73  73  24  24  24   0   7
C |  73   0   0   7   7  24  24  24   0   9
G |   7  96   0   7   7  24  24  24   0  73
T |   9   0  96   9   9  24  24  24  96   7

scan!

Dendrogram of similar interfaces ?

matrix format

  
  --ST----TC----QG------RG------           +-----------------------------7b24_C    
                                         +-1 
  --DCLT--AG--TTRG------RG------   L   +-2 +-----------------------------5h3r_A    
                                       ! ! 
  --------------NASTRGHT--STLT--   L --3 +-----------------------------2c6y_A    
                                       ! 
  STSTQAQG--ST--SART----------KT   L   +-----------------------------5trd_B

home
updated Tue Dec 19 11:56:35 2023