5x11_CD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF BACILLUS SUBTILIS PADR IN COMPLEX WITH OPERATOR DNA
reference	Park et al. 'Nucleic 45 13080 2017
source	Bacillus subtilis subsp. spizizenii strain W23
experiment	X-ray (resolution=2.65, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	5x11_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5x11_C interface=19,37,38,41,64, rvlkyailgllrkgelsgYditsyfkeelgqfwsakHSqiYpelkkltdegfitfrttiqgtkLekkmytltdsgkqelhdwlirhqpipetvkdefmlkayfisslsrqeasdlftdqllkrkaklsdlqgsyeklmapmsfsspdfghylvltkalereknyvswlesilamid > 5x11_D interface=19,37,38,41,64, rvlkyailgllrkgelsgYditsyfkeelgqfwsakHSqiYpelkkltdegfitfrttiqgtkLekkmytltdsgkqelhdwlirhqpipetvkdefmlkayfisslsrqeasdlftdqllkrkaklsdlqgsyeklmaspmsfsspdfghylvltkalereknyvswlesilamid
interface signature	YHSYL/YHSYL

Estimated binding specificities ?

readout + contact

# IC=12.863 IC/col=0.715 n_of_columns=18

specificity:

A |   0  24   0   0  87   2   8  24  24  24  24  72  64   3   0  96  11   0
C |  96  24   0   0   5   5   5  24  24  24  24   8  13   0  96   0  11   2
G |   0  24   0  96   2   2  11  24  24  24  24  11  11   0   0   0  11  94
T |   0  24  96   0   2  87  72  24  24  24  24   5   8  93   0   0  63   0

scan!

home
updated Sat Dec 16 06:46:47 2023