| structure name | CRYSTAL STRUCTURE OF BACILLUS SUBTILIS PADR IN COMPLEX WITH OPERATOR DNA (Transcriptional regulator) |
| reference | Park et al. 'Nucleic 45 13080 2017 |
| source | Bacillus subtilis subsp. spizizenii strain W23 |
| experiment | X-ray (resolution=2.65, R-factor=0.230) |
| structural superfamily | "Winged helix" DNA-binding domain; |
| sequence family | Transcriptional regulator PadRlike family; |
| multimeric complexes | 5x11_AB 5x11_CD 5x11_EFGH |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | YKHSQYPL |
Estimated binding specificities ?
| contact |  |
A | 19 0 0 96 0 96 9 0 C | 11 9 0 0 96 0 19 0 G | 9 11 0 0 0 0 9 96 T | 57 76 96 0 0 0 59 0scan! |
Dendrogram of similar interfaces ?
matrix format------YCKTHGSTQT--YTPT------------------------LG-- L +---------------5x11_A +--6 ------------------NAST--RGHT----STLT------------KA L ! ! +2c6y_A +----7 +---------------1 ------------------NAST--RGHT----STLT-------------- L ! ! +7cby_C ! ! ------------------NAST--RGHTNT--STLT-------------- L +-9 +------------------7fj2_B ! ! --------------QTNAST--RGHTNT--STLA--RT------------ L ! ! +------2hdc_A ! +----------------3 --RT--LTNTHGTA----YTRG------------------------KG-- ! +------2efw_A +-11 ------LTNTHG--RT--YTPT--------------------------RT L ! ! +-----------6qil_A ! ! +--------4 QA------------------------------------------------ ! ! +--8 +-----------7k63_U +-12 ! ! ! --------------------------YG---------------------- ! ! +-10 +--------------------3eyi_B ! ! ! ----RC-------------------------------------------- ! ! +-----------------------7cow_T ! ! ------------------NAST--RTHT----ST---------------- +-13 +--------------------------3co7_C ! ! --------------------------------------NGAGNGDTQG-- ! ! +4o3m_A ! ! +--------------2 --------------------RG----YG---------------------- +-14 +------------5 +1qbj_C ! ! ! --------SGRGPT----SGRG---------------------------- L ! ! +--------------7bhy_A -15 ! ------------VT----KGDC----RGTA-------------------- L ! +----------------------------3sjm_A ! KA------SG--AT----YTRG---------------------------- L +----------------------------4rb3_D |
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updated Tue Dec 19 11:50:21 2023