5wjq_D : 3D-footprint complex

structure name	MOUSEZFP568-ZNF2-11 IN COMPLEX WITH DNA (Zinc finger protein 568)
reference	Patel et al. Cell 173 221 2018
source	Mus musculus
experiment	X-ray (resolution=2.79, R-factor=0.196)
structural superfamily	beta-beta-alpha zinc fingers;
sequence family	Zinc finger, C2H2 type;
reference complex	5v3j_F
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5wjq_D interface=45,47,48,51,73,74,75,101,103,107,128,129,131,132,135,157,160,163,185,187,188,191,213,216,241,243,244,247,269,272,275, gsekpykcqecgkafpsnaqlslhhrvhtdekcfeckecgkafmRpSHllRhqrihtgekphkckecgkafrYDTqlslhllthagarrfeckdcdkvysCaSqlaLhqmshtgekphkckecgkgfISdSHllRhqsvhtgetpykckecgkgfrRgsElaRhqrahsgdkpykckecgksftCtTElfRhqkvhtgdrphkckecgkafiRrsElthhershsgekpyeckecgktfgRgSElsRhqkihtgekpykcqqcgkafiRgsHltQhqriht
interface signature	RSHRYDTCSLISSHRRERCTERRERSERRHQ

Estimated binding specificities ?

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# IC=25.816 IC/col=1.076 n_of_columns=24

specificity:

A |   4   0   0   6   2   0   0   0   0   0  64   0  38   0   0   0  75  96  24  57  96   0   0   0
C |   4   0   0   4  89   0   0   0   0  96  17  96   1   0   0   0   6   0  24  24   0   0   0   0
G |   4  96  96  11   3  96   0  96  96   0   6   0  57  96  96   0   4   0  24   9   0  96  96  96
T |  84   0   0  75   2   0  96   0   0   0   9   0   0   0   0  96  11   0  24   6   0   0   0   0

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updated Mon Dec 18 13:50:23 2023