| structure name | MOUSEZFP568-ZNF1-10 IN COMPLEX WITH DNA (Zinc finger protein 568) |
| reference | Patel et al. Cell 173 221 2018 |
| source | Mus musculus |
| experiment | X-ray (resolution=2.06, R-factor=0.194) |
| structural superfamily | beta-beta-alpha zinc fingers; |
| sequence family | Zinc finger, C2H2 type; |
| redundant complexes |  5v3m_C
5wjq_D
|
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | RSHRDTLSSHRRECTERRRSER |
Estimated binding specificities ?
| readout + contact |  |
A | 0 0 0 0 0 10 0 0 0 96 0 0 0 0 0 1 0 0 96 0 0 0 10 C | 0 96 96 96 0 10 0 0 0 0 96 96 0 0 0 0 96 96 0 96 0 96 64 G | 96 0 0 0 0 23 0 0 0 0 0 0 0 96 0 85 0 0 0 0 96 0 10 T | 0 0 0 0 96 53 96 96 96 0 0 0 96 0 96 10 0 0 0 0 0 0 12scan! |
Dendrogram of similar interfaces ?
matrix formatRGSGHGRGYADCTT------CT--STQTLTITST--STHTRG--RG--EA--RA------TTTGECRG--RG----ET------RGSCECRG L +------------------5v3j_F ! --------------------------------------------DCSCQG--KT--TTAT--SCSC----DC--SGATRARG--RGDCNA-- L +--9 +-----------6ml4_A ! ! +----4 DCYCKGRGQA----TC----RC--SCDCVT-------------------------------------------------------------- L ! +-6 +-----------5k5i_A ! ! ----------------------------------------------------------QA----TCRG--RG--YCRT-------------- L ! +----------------7txc_E ! ------------------------------------SA--MT--VT--NA--RG--------ETTG----YG--ST---------------- ! +--6e94_A +-11 +--------2 DGYCKGRGQA----TC----RA--SCDCVT-------------------------------------------------------------- L ! ! ! +--5k5h_A ! ! +-----5 --------------------RGSTDTEGRG--RGSGDCHGTT--RGDAEG--RG-------------------------------------- L ! ! ! ! +4x9j_A ! ! ! +-----------1 --------------------------KG--------HTHGRGTGTTACNA--KGRG------------------------------------ L ! ! +---8 +1tf3_A ! ! ! ! ------------------------------------------FT--KAYT--------WT--WTSTET--FTVASGDC--SARG-------- L +---12 ! ! ! +----------6jnm_A ! ! +-10 +------3 ------------------------------RGST--YGYC----QCTGSTRGYT-------------------------------------- ! ! ! +----------4is1_C ! ! ! ------------------QT--AG--KGRG--RG--DCKG---------------------------------------------------- L ! ! +---------------------7n5w_A -13 ! --------------------------------------YG----WTWTST--ET----FTVASGDCSART---------------------- L ! ! +----------------6a57_A ! +------7 NTSTNAVTQTSTSGKGRG-------------------------------------------------------------------------- L ! +----------------6u9q_A ! ------------------------------------TCSGRG--LTETYC--------NTYGQG---------------------------- L +----------------------------6dfb_A |
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updated Tue Dec 19 11:27:11 2023