5vfx_BC : 3D-footprint complex

structure name	STRUCTURE OF AN ACCESSORY PROTEIN OF THE PCW3 RELAXOSOME IN COMPLEX WITH THE ORIGIN OF TRANSFER (ORIT) DNA
reference	Wisniewski et al. 'Nat 9 3732 2018
source	CLOSTRIDIUM PERFRINGENS
experiment	X-ray (resolution=2.81, R-factor=?)
structural superfamily	Ribonuclease H-like;
reference complex	5vfx_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5vfx_B interface=27,74,76,81,83, kdlnlyakelvdvvnylmkknqlvfsRnnkfiyvntetiksmlekrnydtvdgklylwrelewiecaedrfnkRiKidgeNmYavvikyssysilkrlyl > 5vfx_C interface=27,69,70,74,76,81,83, kdlnlyakelvdvvnylmkknqlvfsRnnkfiyvntetiksmlekrnydtvdgklylwrelewiecaeDRfnkRiKidgeNmYavvikyssysilkrlyl
interface signature	RRKNY/RDRRKNY

Estimated binding specificities ?

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# IC=20.737 IC/col=1.091 n_of_columns=19

specificity:

A |  78   0   0   0   0   0   0   0   6   6  78  24  96   0   0   0   0   0   6
C |   6   0   0   0  96  96  96   0   6   6   6  24   0   0   0   0  96  96   6
G |   6  96   0   0   0   0   0   0  78   6   6  24   0  96   0   0   0   0   6
T |   6   0  96  96   0   0   0  96   6  78   6  24   0   0  96  96   0   0  78

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updated Sat Dec 16 06:18:07 2023