5vfx_A : 3D-footprint complex

structure name	STRUCTURE OF AN ACCESSORY PROTEIN OF THE PCW3 RELAXOSOME IN COMPLEX WITH THE ORIGIN OF TRANSFER (ORIT) DNA (TCPK)
reference	Wisniewski et al. 'Nat 9 3732 2018
source	CLOSTRIDIUM PERFRINGENS
experiment	X-ray (resolution=2.81, R-factor=0.200)
structural superfamily	Ribonuclease H-like;
multimeric complexes	5vfx_BC 5vfx_FG
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5vfx_A interface=27,69,70,74,76,81,83, kdlnlyakelvdvvnylmkknqlvfsRnnkfiyvntetiksmlekrnydtvdgklylwrelewiecaeDRfnkRiKidgeNmYavvikyssysilkrlyl
interface signature	RDRRKNY

Estimated binding specificities ?

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# IC=8.899 IC/col=1.112 n_of_columns=8

specificity:

A |  38   0   0   0   0   0   0   0
C |  19   0  19   0  96  96  96   0
G |  20  96   0   0   0   0   0   0
T |  19   0  77  96   0   0   0  96

scan!

Dendrogram of similar interfaces ?

matrix format

  
  ITRGECSCSG--------   L      +--------------------------5i2d_R    
                              ! 
  ------KT--RGYA----   L   +--3                        +-4l18_B    
                           !  !                    +---1 
  ------KT--RGYT----   L   !  +--------------------2   +-4bqa_A    
                         --4                       ! 
  ----ECKT--RGHT----   L   !                       +-----4mhg_A    
                           ! 
  ----NASTRGHT--STLT   L   +-----------------------------2c6y_A

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updated Tue Dec 19 11:30:38 2023