5und_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF CTCF(ZNF 4-10) WITH 28-MER DNA
reference	Horton et al. 'Mol. 66 711 2017
source	Homo sapiens
experiment	X-ray (resolution=2.55, R-factor=?)
structural superfamily	beta-beta-alpha zinc fingers;
reference complex	5und_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5und_A interface=15,17,18,21,43,44,45,46,49,71,74,101,103,104,107, ekpfkcsmcdyasvEvSKlkRhirshtgerpfqcslcsyasrDTYKlkRhmrthsgekpyecyicharftQsgTmkmhilqkhtenvakfhcphcdtviaRkSDlgVhlrkqhsyieqgkkcrycdavfheryaliqhqkshknekrfkcdqcdyacrqerhmimhkrtht > 5und_B interface=15,17,18,21,43,45,46,49,71,74,101,102,103,104,107,110, ekpfkcsmcdyasvEvSKlkRhirshtgerpfqcslcsyasrDtYKlkRhmrthsgekpyecyicharftQsgTmkmhilqkhtenvakfhcphcdtviaRKSDlgVhlRkqhsyieqgkkcrycdavfheryaliqhqkshkne
interface signature	ESKRDTYKRQTRSDV/ESKRDYKRQTRKSDVR

Estimated binding specificities ?

readout + contact

# IC=29.095 IC/col=1.164 n_of_columns=25

specificity:

A |   8   0  96   5   0  96   0   0   0   0   0   0   8   8   0   8   0   5   0   0   0   0   0   0   0
C |  75  96   0   4  96   0   0   0   0   0   0  96   8  70   0  64  96  91  96  96   0   0  87   0   0
G |   4   0   0  83   0   0  96  96  96  96  96   0  76  10  96  12   0   0   0   0   0  96   1   0  96
T |   9   0   0   4   0   0   0   0   0   0   0   0   4   8   0  12   0   0   0   0  96   0   8  96   0

scan!

home
updated Sat Dec 16 06:17:08 2023