5tgx_AB : 3D-footprint complex

structure name	RESTRICTION/MODIFICATION SYSTEM-TYPE II R-SWAI COMPLEXED WITH PARTIALLY CLEAVED DNA
reference	Stoddard et al. 'Nucleic 45 1516 2017
source	Staphylococcus warneri
experiment	X-ray (resolution=2.30, R-factor=?)
reference complex	5tgx_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5tgx_A interface=34,71,102,103,104,105,106,161,163,165,167,169, nfkkyeenlvasieeviqriiddkhrpniigktRvgaevsdyledefvkyissgkssslydaqgapkektKnpwdarckfkfmdreeeiwidfkafkitnmDSNPDigtpnkivkfihegnfylvfvlvyyeskqdgvefvkynndykkvyllkdvnesfRiNpKpQmQvniaaeptyrtreefihffvkkwkesferqikslekkeimlkdledklknsndnsi > 5tgx_B interface=34,37,71,102,103,104,105,106,161,163,165,167,169, nfkkyeenlvasieeviqriiddkhrpniigktRvgAevsdyledefvkyissgkssslydaqgapkektKnpwdarckfkfmdreeeiwidfkafkitnmDSNPDigtpnkivkfihegnfylvfvlvyyeskqdgvefvkynndykkvyllkdvnesfRiNpKpQmQvniaaeptyrtreefihffvkkwkesferqikslekkeimlkdledklknsndnsi
interface signature	RKDSNPDRNKQQ/RAKDSNPDRNKQQ

Estimated binding specificities ?

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# IC=12.283 IC/col=1.228 n_of_columns=10

specificity:

A |   4  96   0   0   0  96  96  96   0   4
C |  81   0   0   0   0   0   0   0   0   4
G |   4   0   0   0   0   0   0   0   0  84
T |   7   0  96  96  96   0   0   0  96   4

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updated Sat Dec 16 05:46:23 2023