5tgx_A : 3D-footprint complex

structure name	RESTRICTION/MODIFICATION SYSTEM-TYPE II R-SWAI COMPLEXED WITH PARTIALLY CLEAVED DNA (R-SwaI protein)
reference	Stoddard et al. 'Nucleic 45 1516 2017
source	Staphylococcus warneri
experiment	X-ray (resolution=2.30, R-factor=0.200)
multimeric complexes	5tgx_AB 5tgx_CD 5th3_AB 5th3_CD
redundant complexes	5th3_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5tgx_A interface=34,71,102,103,104,105,106,161,163,165,167,169, nfkkyeenlvasieeviqriiddkhrpniigktRvgaevsdyledefvkyissgkssslydaqgapkektKnpwdarckfkfmdreeeiwidfkafkitnmDSNPDigtpnkivkfihegnfylvfvlvyyeskqdgvefvkynndykkvyllkdvnesfRiNpKpQmQvniaaeptyrtreefihffvkkwkesferqikslekkeimlkdledklknsndnsi
interface signature	RKDSNPDRNKQQ

Estimated binding specificities ?

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# IC=9.003 IC/col=1.000 n_of_columns=9

specificity:

A |  73   9   7   0  75  96  96   0   0
C |   7   7   7   0   7   0   0   0   0
G |   9   7   7   0   7   0   0   0  96
T |   7  73  75  96   7   0   0  96   0

scan!

Related DNA sequences reported in the literature ?

site	source	matches (E-value)
term: R-SWAI
ATTTAAAT	PubMed	5tgx_A(1.09e-13), 5tgx_AB(6.38e-13), 5tgx_CD(6.38e-13)

Dendrogram of similar interfaces ?

matrix format

  
  RA------KT----DTSANTPADA----RC--NT--KTQTQT   L             +-------------5tgx_A    
                                                        +----1 
  ------QCNT------QC------------------ATQCQG   L   +----2    +-------------3ebc_A    
                                                   !    ! 
  --------NC------------TT------ST--NATT----   L --3    +------------------2ge5_B    
                                                   ! 
  --EAKT----RCTTAT--NA--KGDCKA--------------   L   +-----------------------3wvk_C

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updated Tue Dec 19 11:19:30 2023