5t0u_D : 3D-footprint complex

structure name	CTCF ZNF2-7 AND DNA COMPLEX STRUCTURE (Transcriptional repressor CTCF)
reference	Hashimoto et al. 'Mol. 66 711 2017
source	Homo sapiens
experiment	X-ray (resolution=3.20, R-factor=0.231)
structural superfamily	beta-beta-alpha zinc fingers;
sequence family	Zinc finger, C2H2 type;
reference complex	5kkq_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5t0u_D interface=12,14,15,40,41,43,46,50,69,71,72,75,97,99,100,103,124,125,128,155,157,158, hkchlcgrafrTvTLlrnhlnthtgtrphkcpdcdmafvTSgElvRhrrYkhthekpfkcsmcdyasvEvSKlkRhirshtgerpfqcslcsyasrDtYKlkRhmrthsgekpyecyicharfTQsgTmkmhilqkhtenvakfhcphcdtviaRkSDlgvhlrkqhsy
interface signature	TTLTSERYESKRDYKRTQTRSD

Estimated binding specificities ?

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# IC=14.685 IC/col=1.049 n_of_columns=14

specificity:

A |   9   0  24   9   0  96   0   0   0   0   0   0   0   9
C |  59  96  24   9  96   0   0   0   0   0   0  96   0  57
G |   9   0  24  78   0   0  96  96  96  96  96   0  96   9
T |  19   0  24   0   0   0   0   0   0   0   0   0   0  21

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updated Mon Dec 18 13:32:00 2023