interface graph thumbnail
legend  pdf

structure nameTERNARY COMPLEX OF 9N DNA POLYMERASE IN THE REPLICATIVE STATE WITH TWO METAL IONS IN THE ACTIVE SITE
(DNA polymerase)
referenceDiederichs et al. 'PLoS 12 e0188005 2017
sourceThermococcus sp. 9oN-7
experimentX-ray (resolution=2.00, R-factor=0.192)
structural superfamilyDNA/RNA polymerases;Ribonuclease H-like;
sequence familyDNA polymerase family B; DNA polymerase family B, exonuclease do;
redundant complexes4k8x_A 5omq_A 6isf_A 6isg_A 6ish_A 6isi_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureYYTKR

Estimated binding specificities ?

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# IC=2.295 IC/col=0.574 n_of_columns=4 specificity:   
A |   7   7   7   7
C |   7   9   7  73
G |   7  73  73   7
T |  75   7   9   9
scan!

Dendrogram of similar interfaces ?

matrix format



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updated Tue Dec 19 11:08:49 2023