interface graph thumbnail
legend  pdf

structure nameTERNARY COMPLEX OF 9N DNA POLYMERASE IN THE REPLICATIVE STATE WITH THREE METAL IONS IN THE ACTIVE SITE
(DNA polymerase)
referenceDiederichs et al. 'PLoS 12 e0188005 2017
sourceThermococcus sp. (strain 9oN-7) / Thermococcus sp. (strain 9oN-7)
experimentX-ray (resolution=2.20, R-factor=0.196)
structural superfamilyDNA/RNA polymerases;Ribonuclease H-like;
sequence familyDNA polymerase family B; DNA polymerase family B, exonuclease do;
reference complex5omv_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureYYTKR

Estimated binding specificities ?

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# IC=2.295 IC/col=0.574 n_of_columns=4 specificity:   
A |   9   7   7   7
C |   7   9   7  75
G |   7  73  73   7
T |  73   7   9   7
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updated Mon Dec 18 13:27:11 2023