5nsr_M : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF RNA POLYMERASE-SIGMA54 HOLO ENZYME WITH PROMOTER DNA CLOSED COMPLEX (RNA POLYMERASE SIGMA-54 FACTOR,RNA POLYMERASE SIGMA-54...)
source	KLEBSIELLA PNEUMONIAE
experiment	NMR
sequence family	Sigma54, DNA binding domain; Sigma54 factor, core binding domain;
redundant complexes	5nss
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5nsr_M interface=5,6,294,353,367,369,370, xxxxXXxxxxxxxxxxxxxxxxxxxxxxxxxxxxqtlqdylmwqveltpftdtdraiatsivdavddtgyltiqiedivdsigddeigleeveavlkriqrfdpvgvaakdlrdclliqlsqfaketpwleearliisdhldllanhdfrtlmrvtrlkeevlkeavnliqsldxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxmgnsarndadgqfirsnlqearwlikslesrndtllrvsrciveqqqaffeqgeeymkpmvladiaqavemheStisrvttqkylhsprgixxxxxxxxxxxxxxxxasstairalvkkliaaenpakplsdSkltsmlseqgimvArRTvakyreslsippsnqr
interface signature	XXSSART

Estimated binding specificities ?

readout + contact

# IC=3.162 IC/col=0.263 n_of_columns=12

specificity:

A |  10   6  96  24  24  24  24  24  24  24   5  10
C |  10  80   0  24  24  24  24  24  24  24  32  10
G |  66   5   0  24  24  24  24  24  24  24  11  66
T |  10   5   0  24  24  24  24  24  24  24  48  10

scan!

Dendrogram of similar interfaces ?

matrix format

  
  ----------------DTRGRCTTKTRT   L       +-----------------------------2o9l_A    
                                       +-1 
  RCET--SAQAKT----------------   L   +-2 +-----------------------------6qec_A    
                                     ! ! 
  STVCKGDCRG------------------   L --3 +-----------------------------1w0t_A    
                                     ! 
  ------------YGRG------------       +-----------------------------4wcg_A

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updated Mon Dec 18 13:25:59 2023