5mga_A : 3D-footprint complex

structure name	STRUCTURE OF THE CPF1 ENDONUCLEASE R-LOOP COMPLEX AFTER DNA CLEAVAGE (CRISPR-associated endonuclease Cpf1)
reference	Montoya et al. Nature 546 559 2017
source	Francisella tularensis subsp. novicida U112
experiment	X-ray (resolution=3.00, R-factor=0.243)
reference complex	6gtc_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5mga_A interface=175,178,540,543,590,594,595,598,754, iyqefvnkyslsktlrfelipqgktlenikarglilddekrakdykkakqiidkyhqffieeilssvcisedllqnysdvyfklkksdddnlqkdfksakdtikkqiseyikdsekfknlfnqnlidakkgqesdlilwlkqskdngielfkansditdidealeiiksfkgwtTyfKgfhenrknvyssndiptsiiyrivddnlpkflenkakyeslkdkapyeqikkdlaeeltfdddyknqrvfsldevfeianfnnylnqsgitkfntiiggkfvngentkrkgineyinlysqndktlkkykmsvlfkqilsdtesksfvidkleddsdvvttmqsfyeqiaafktketlsllfddlkksltdlsqqvfddykeqeliakktekakylsletilidkqcrfeeilanfaaipmifdeiaqnkdnlaqisikyqnqgkkdllqasaeddvkaikdlldqtnnllhklkifhisqsedkadehfylvfeecyfelanivplynkirnyitqkpysdekfklnfenstlangwdknKepDntailfikddkyylgvmnkknnkifddkaikenkgegykkivykllPganKMlpKvffsaksikfynpsedilrirnhsthtkngspqkgyekfefniedcrkfidfykqsiskhpewkdfgfrfsdtqrynsidefyrevenqgykltfenisesyidsvvnqgklylfqiynkdfsayskgrpnlhtlywkalfdernlqdvvyklngEaelfyrkqsipkkiianknkdnpkkesvfeydlikdkrftedkfffhcpitinfkssgankfndeinlllkekandvhilsidrgerhlayytlvdgkgniikqdtfniignyhdklaaiekdrdsarkdwkkinnikemkegylsqvvheiaklvieynaivvfedlnfgvekqvyqklekmlieklnylvfkdnefdktggvlrayqltapfetfkkmgkqtgiiyyvpagftskicpvtgfvnqlypvsksqeffskfdkicynldkgyfefsfdyknfgdkgkwtiasfgsrlinnhnwdtrevyptkelekllkdygecikaicgesdkkffakltsvlntilqmrnskeldylispvadvngnffdsrqapknmpqdadangayhiglkglmllgriknnqeklnlvikneeyfefvqnrnn
interface signature	TKKDPKMKE

Estimated binding specificities ?

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# IC=3.178 IC/col=0.795 n_of_columns=4

specificity:

A |  18   1   7  96
C |  18   1   7   0
G |  42   1   8   0
T |  18  93  74   0

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updated Mon Dec 18 13:19:15 2023