5kl2_A : 3D-footprint complex

structure name	WILMS TUMOR PROTEIN (WT1) ZNF2-4 IN COMPLEX WITH DNA (Wilms tumor protein)
reference	Hashimoto et al. 'Nucleic 44 10165 2016
source	Homo sapiens
experiment	X-ray (resolution=1.69, R-factor=0.166)
structural superfamily	beta-beta-alpha zinc fingers;
sequence family	Zinc finger, C2H2 type;
reference complex	5kl3_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5kl2_A interface=17,19,20,23,45,46,47,48,51,75,76,77,78,81, ekpyqcdfkdcerrfsRsDQlkRhqrrhtgvkpfqcktcqrkfsRSDHlkThtrthtgekpfscrwpscqkkfaRSDElvRhhnmhqr
interface signature	RDQRRSDHTRSDER

Estimated binding specificities ?

readout + contact

# IC=11.267 IC/col=1.127 n_of_columns=10

specificity:

A |  48   0   0   0   0   0  96   0   0   0
C |  16  96  16  96  96  80   0  96   0  96
G |  16   0   0   0   0   0   0   0  96   0
T |  16   0  80   0   0  16   0   0   0   0

scan!

home
updated Mon Dec 18 13:13:24 2023