5kbj_ABG : 3D-footprint complex

structure name	STRUCTURE OF REP-DNA COMPLEX
reference	'Proc. 111 9121 2014 X-RAY DIFFRACTION
source	Staphylococcus aureus
experiment	X-ray (resolution=3.09, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	5kbj_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5kbj_A interface=76,77,80,81,96,99, qyftvqenykerfyqipkvfftsenyknltndmkiayailrdrlnlsiknswvdedgniyfvysneklmeilnckKEklTKikkglendglliqkRrgLnkpnilylmkpivterdiykiekeendvepy > 5kbj_B interface=76,77,96,99,100, qyftvqenykerfyqipkvfftsenyknltndmkiayailrdrlnlsiknswvdedgniyfvysneklmeilnckKEkltkikkglendglliqkRrgLNkpnilylmkpivterdiykiekeendvepy > 5kbj_G interface= qnqyftvqenykerfyqipkvfftsenyknltndmkiayailrdrlnlsiknswvdedgniyfvysneklmeilnCKkekltkikkglendglliQkrRGlnkpnilylmkpivterdiykiekeendv
interface signature	KETKRL/KERLN/CKQRG

Estimated binding specificities ?

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# IC=13.910 IC/col=0.580 n_of_columns=24

specificity:

A |   9   2  96   0  24  88   9   8   0   0  24  24  24  24  24  24   0   0  24  24   0   8  24   8
C |  74  90   0   0  24   2   8  10   0  96  24  24  24  24  24  24  96   0  24  24  96  10  24  72
G |   8   2   0  96  24   2  74  12   0   0  24  24  24  24  24  24   0  96  24  24   0  65  24   8
T |   5   2   0   0  24   4   5  66  96   0  24  24  24  24  24  24   0   0  24  24   0  13  24   8

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updated Sat Dec 16 03:08:06 2023