5kbj_B : 3D-footprint complex

structure name	STRUCTURE OF REP-DNA COMPLEX (Replication initiator A, N-terminal)
reference	'Proc. 111 9121 2014 X-RAY DIFFRACTION
source	Staphylococcus aureus
experiment	X-ray (resolution=3.09, R-factor=0.231)
structural superfamily	"Winged helix" DNA-binding domain;
sequence family	Replication initiator protein A RepA Nter;
multimeric complexes	5kbj_ABG
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5kbj_B interface=76,77,96,99,100, qyftvqenykerfyqipkvfftsenyknltndmkiayailrdrlnlsiknswvdedgniyfvysneklmeilnckKEkltkikkglendglliqkRrgLNkpnilylmkpivterdiykiekeendvepy
interface signature	KERLN

Estimated binding specificities ?

contact

# IC=8.621 IC/col=0.862 n_of_columns=10

specificity:

A |   0  96  50   1   5  24   5   0   6  16
C |   0   0  20  90   5  24  81   0   5   0
G |  96   0  10   5   0  24   5   0  80  80
T |   0   0  16   0  86  24   5  96   5   0

scan!

Dendrogram of similar interfaces ?

matrix format

  
  ------------RGYG--           +-----------------------------1qbj_C    
                             +-1 
  QTSTRTETTA--RA----   L   +-2 +-----------------------------3iyd_H    
                           ! ! 
  --TT--SGLTYA------   L --3 +-----------------------------2nra_C    
                           ! 
  ------TTHT--KG--RC   L   +-----------------------------7b0c_A

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updated Tue Dec 19 10:49:29 2023