5jlt_AD : 3D-footprint complex

structure name	THE CRYSTAL STRUCTURE OF THE BACTERIOPHAGE T4 MOTA C-TERMINAL DOMAIN IN COMPLEX WITH DSDNA REVEALS A NOVEL PROTEIN-DNA RECOGNITION MOTIF
reference	Robertson et al. 'Nucleic 46 5308 2018
source	Enterobacteria phage T4
experiment	X-ray (resolution=2.96, R-factor=?)
structural superfamily	DNA-binding C-terminal domain of the transcription factor MotA;
reference complex	5jlt_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5jlt_A interface=4,37,38,53,68,90, ratRkareitsdmeedkdlmlklldkngfvlkkveiYRsnylailekrtngiRnfeinnngnmrifgYkmmehhiqkftdigmsckiakNgnvyldikrsaenieavitvasel > 5jlt_D interface=30,45,60,82,86, itsdmeedkdlmlklldkngfvlkkveiyRsnylailekrtngiRnfeinnngnmrifgYkmmehhiqkftdigmsckiakNgnvYldikrsaenieavitvasel
interface signature	RYRRYN/RRYNY

Estimated binding specificities ?

contact

# IC=10.978 IC/col=0.686 n_of_columns=16

specificity:

A |   0   2   0   0   0   2  24  24  92  87  24  65  24  24   5   0
C |  84   2  10   0   0  87  24  24   2   2  24   8  24  24  79  93
G |  10   2   2   0  96   5  24  24   0   2  24  10  24  24   2   0
T |   2  90  84  96   0   2  24  24   2   5  24  13  24  24  10   3

scan!

home
updated Sat Dec 16 03:00:39 2023