5fmp_AB : 3D-footprint complex

structure name	KSTR, TRANSCRIPTIONAL REPRESSOR OF CHOLESTEROL DEGRADATION IN MYCOBACTERIUM TUBERCULOSIS, BOUND TO THE DNA OPERATOR
reference	Podust et al. 'To ? ? ?
source	MYCOBACTERIUM TUBERCULOSIS
experiment	X-ray (resolution=2.26, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	5fmp_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5fmp_A interface=30,31,40,41,43,45, gseaqrerrkrildatmaiaskggyeavqMRavadradvAVgTlYryfpskvhllvsalgrefsridaktdrsavagatpfqrlnfmvgklnramqrnpllteamtrayvfadasaasevdqveklidsmfaramangeptedqyhiarvisdvwlsnllawltrrasatdvskrldlavrlli > 5fmp_B interface=29,30,39,40,42,44, seaqrerrkrildatmaiaskggyeavqMRavadradvAVgTlYryfpskvhllvsalgrefsridaktdrsavagatpfqrlnfmvgklnramqrnpllteamtrayvfadasaasevdqveklidsmfaramangeptedqyhiarvisdvwlsnllawltrrasatdvskrldlavrlli
interface signature	MRAVTY/MRAVTY

Estimated binding specificities ?

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# IC=10.753 IC/col=0.768 n_of_columns=14

specificity:

A |  10  61  24  85  96   0  96   0   0   0   6  24  24  65
C |  11  15  24   5   0  96   0  96   0   0   5  24  24  10
G |  10  10  24   1   0   0   0   0  96   0   5  24  24  11
T |  65  10  24   5   0   0   0   0   0  96  80  24  24  10

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updated Sat Dec 16 01:14:48 2023