5dwb_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF SPECIFIC RESTRICTION ENDONUCLEASE AGEI-DNA COMPLEX
reference	Tamulaitiene et al. 'Nucleic 45 3547 2017
source	Thalassobius gelatinovorus
experiment	X-ray (resolution=2.40, R-factor=?)
reference complex	5dwa_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5dwb_A interface=86,89,90,120,170,172,173,174,200,202,203,214,224, mrldldfgrglvahvmldnvseeqyqqisdyfvplvnkpklksrdaigqafvmatevcpdanpsdlwhhvlyriyirekigtdpsQswVRtsgeafevalverynpvlarhgirltalfKgqkglaltrmgvadrvgsrkvdvmiekqgggrspdaegfgvvggihakvSlAERvsddipasrimmgegllsvlstldvKsFPpphgdlvnrgElgtpdrpsdKrnyieghgdfsacfsynlrtspsnattpsgrhiyvsgfsgqddeftdylvaqla > 5dwb_B interface=86,89,90,120,170,172,173,174,200,202,203,214,224, mrldldfgrglvahvmldnvseeqyqqisdyfvplvnkpklksrdaigqafvmatevcpdanpsdlwhhvlyriyirekigtdpsQswVRtsgeafevalverynpvlarhgirltalfKgqkglaltrmgvadrvgsrkvdvmiekqgggrspdaegfgvvggihakvSlAERvsddipasrimmgegllsvlstldvKsFPpphgdlvnrgElgtpdrpsdKrnyieghgdfsacfsynlrtspsnattpsgrhiyvsgfsgqddeftdylvaqla
interface signature	QVRKSAERKFPEK/QVRKSAERKFPEK

Estimated binding specificities ?

readout + contact

# IC=7.585 IC/col=0.690 n_of_columns=11

specificity:

A |  15  13  94  13   0   0   6   2  13  41  40
C |  63   7   0  79  95   0   1   7  58   2  16
G |  13  65   0   0   0  95  54   2  10  50  20
T |   5  11   2   4   1   1  35  85  15   3  20

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updated Sat Dec 16 00:46:32 2023