5bpd_ABCD : 3D-footprint complex

structure name	STRUCTURE OF TRMBL2, AN ARCHAEAL CHROMATIN PROTEIN, SHOWS A NOVEL MODE OF DNA BINDING.
reference	Diederichs et al. J.Mol.Biol. 427 3216 2015
source	PYROCOCCUS FURIOSUS
experiment	X-ray (resolution=2.40, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;Phospholipase D/nuclease;
reference complex	5bpd_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5bpd_A interface=18,44,46,47,49,50, skdrmvellqehfelnlYearayvalvafgvltpaelasvsevPaPRtYDvlrslekkgfamtqpgktnkyrpvhpanvlekfiqdwqervkeeleakkkakeellelmaplietevpkygvervwvvrgiknstlktkemleeaqneilladdgfiavnleddiikavdrgvktkilltknllprlkaskiidyakegklelraldkfdlpmlicdeevffaledlaaryfnyetqvwikdhrvvalfkekfneywekaekv > 5bpd_B interface=18,44,46,47,49,50, skdrmvellqehfelnlYearayvalvafgvltpaelasvsevPaPRtYDvlrslekkgfamtqpgktnkyrpvhpanvlekfiqdwqervkeeleakkkakeellelmaplietevpkygvervwvvrgiknstlktkemleeaqneilladdgfiavnleddiikavdrgvktkilltknllprlkaskiidyakegklelraldkfdlpmlicdeevffaledlaaryfnyetqvwikdhrvvalfkekfneywekaek > 5bpd_C interface=18,44,46,47,49, skdrmvellqehfelnlYearayvalvafgvltpaelasvsevPaPRtYdvlrslekkgfamtqpgktnkyrpvhpanvlekfiqdwqervkeeleakkkakeellelmaplietevpvervwvvrgiknstlktkemleeaqneilladdgfiavnleddiikavdrgvktkilltknllprlkaskiidyakegklelraldkfdlpmlicdeevffaledlaaryfnyetqvwikdhrvvalfkekfneywekaekv > 5bpd_D interface=19,45,47,48,50, mskdrmvellqehfelnlYearayvalvafgvltpaelasvsevPaPRtYdvlrslekkgfamtqpgktnkyrpvhpanvlekfiqdwqervkeeleakkkakeellelmaplietekygvervwvvrgiknstlktkemleeaqneilladdgfiavnleddiikavdrgvktkilltknllprlkaskiidyakegklelraldkfdlpmlicdeevffaledlaaryfnyetqvwikdhrvvalfkekfneywekae
interface signature	YPPRYD/YPPRYD/YPPRY/YPPRY

Estimated binding specificities ?

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# IC=12.199 IC/col=0.642 n_of_columns=19

specificity:

A |  82   6  96   0   6  96  24  24  24  24  24  24  24   0   4  96   0  91   4
C |   0   8   0  17  82   0  24  24  24  24  24  24  24   0   8   0   0   4   8
G |  10   8   0   1   4   0  24  24  24  24  24  24  24   0  74   0   0   1   4
T |   4  74   0  78   4   0  24  24  24  24  24  24  24  96  10   0  96   0  80

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updated Fri Dec 15 23:47:05 2023