| structure name | STRUCTURE OF TRMBL2, AN ARCHAEAL CHROMATIN PROTEIN, SHOWS A NOVEL MODE OF DNA BINDING. (TRMBL2) |
| reference | Diederichs et al. J.Mol.Biol. 427 3216 2015 |
| source | PYROCOCCUS FURIOSUS |
| experiment | X-ray (resolution=2.40, R-factor=0.236) |
| structural superfamily | "Winged helix" DNA-binding domain;Phospholipase D/nuclease; |
| sequence family | Sugarspecific transcriptional regulator Trm; |
| multimeric complexes | 5box_ABCD 5bpd_ABCD 5bpi_ABCD |
| redundant complexes |  5box_A
5bpi_C
|
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | YPPRYD |
Estimated binding specificities ?
| contact |  |
A | 56 9 78 2 C | 13 9 6 2 G | 14 9 6 2 T | 13 69 6 90scan! |
Dendrogram of similar interfaces ?
matrix format----------------YGRG------ +--4wcg_A +-----------4 ETNTSCRGHC--RT--------QA-- ! +--5d4s_B +---------5 ----TT--PTTCSTNT--------RT L ! ! +4lln_I ! +--------------3 --NGLTKTPTSTTT----RT----RT L +-7 ! +7el3_B ! ! +-1 --ET--RGTCTGSTRG--------KT L ! ! +6q2b_B +-8 ! ----STQTPTPGTTRG---------- L ! ! +------------------------5xxp_A ! ! --------KGTA--TA--RG------ L --9 +--------------------------1xsd_A ! --------------RCYG--KT---- ! +2acj_B ! +----------------------2 --------TTHT--KG------RC-- L +----6 +7b0c_A ! ----NTHG--RTYTPT--------RT L +----------------------6qil_A |
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updated Tue Dec 19 10:08:03 2023