interface graph thumbnail
legend  pdf

structure nameANTITOXIN PHD FROM PHAGE P1 IN COMPLEX WITH ITS OPERATOR DNA INVERTED REPEAT IN A MONOCLINIC SPACE GROUP
(Antitoxin phd)
referenceGarcia-Pino et al. Nat.Chem.Biol. 12 490 2016
sourceEnterobacteria phage P1
experimentX-ray (resolution=3.88, R-factor=0.262)
structural superfamilyYefM-like;
sequence familyPhd_YefM;
multimeric complexes4zm0_BC 4zm2_AB 4zm2_CD
reference complex4zm0_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureFRR

Estimated binding specificities ?

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# IC=2.819 IC/col=0.564 n_of_columns=5 specificity:   
A |  69  11  24   0   0
C |   9   9  24   0  19
G |   9   9  24   0  68
T |   9  67  24  96   9
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updated Mon Dec 18 11:47:29 2023