3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

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updated Fri Dec 15 22:23:02 2023

structure name	THE NUCLEOSOME CONTAINING HUMAN H3.5
reference	Kurumizaka et al. 'Epigenetics 9 2 2016
source	HOMO SAPIENS
experiment	X-ray (resolution=2.80, R-factor=?)
structural superfamily	Histone-fold;PH domain-like;lambda repressor-like DNA-binding domains;p53-like transcription factors;
reference complex	4z5t_A 5gtc_H 5o9g_F 6a5l_d 6a5l_g 6buz_H 6c0w_H 6ftx_B 6r8y_H 6see_H 6t7a_H 6upk_H 6x59_H 6y5d_H 7d1z_H 7e8d_H 7jzv_N 7k5x_H 7k60_H 7k63_H 7nkx_f 7pet_H 7scy_H 7u0g_M 7vdt_B 7xcr_F 7xzx_N 7xzz_N 8h0v_h 8t9f_F
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4z5t_A interface=3,28, phRyrpgtvalreirryqkstellirkLpfqrlvreiaqdfntdlrfqsaavgalqeaseaylvglledtnlcaihakrvtimpkdiqlarrirger > 4z5t_B interface=26, kvlrdniqgitkpairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg > 4z5t_C interface=29, aktrssraglqfpvgrvhrllrkgnyseRvgagapvylaavleyltaeilelagnaardnkktriiprhlqlairndeelnkllgrvtiaqggvlpniqavllpk > 4z5t_D interface= rkesysiyvykvlkqvhpdtgisskamgImnsfvndiferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsa > 4z5t_E interface=2,3,27, hRYrpgtvalreirryqkstellirkLpfqrlvreiaqdfntdlrfqsaavgalqeaseaylvglledtnlcaihakrvtimpkdiqlarrirger > 4z5t_F interface=22, dniqgitkpairrlarrggvkRisgliyeetrgvlkvflenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg > 4z5t_G interface=28, ktrssraglqfpvgrvhrllrkgnyseRvgagapvylaavleyltaeilelagnaardnkktriiprhlqlairndeelnkllgrvtiaqggvlpniqavllpk > 4z5t_H interface= rkesysiyvykvlkqvhpdtgisskamGimnsfvndiferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkytsa