interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameTHE NUCLEOSOME CONTAINING HUMAN H3.5
(HISTONE H3.3C)
referenceKurumizaka et al. 'Epigenetics 9 2 2016
sourceHOMO SAPIENS
experimentX-ray (resolution=2.80, R-factor=0.230)
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes4z5t_ABCDEFGH
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  --RG----------RT                      +--------------7zs9_e    
                                +-------4 
  --RGYA--------RT              !       !              +7wlr_E    
                                !       +--------------1 
  --RG------------         +----7                      +6a5l_e    
                           !    ! 
  HTRG--RA--------         !    !  +-------------------7nky_e    
                           !    +--5 
  --------------RT         !       !                   +1u35_G    
                         +-8       +-------------------2 
  --------------RT       ! !                           +7lyb_G    
                         ! ! 
  ----------IT--RA       ! !                    +------7k78_E    
                       --9 !       +------------3 
  --------RAETRT--       ! +-------6            +------4ne1_p    
                         !         ! 
  --------------RA       !         +-------------------6t7a_C    
                         ! 
  --RG----------RT       +-----------------------------7lya_E    
                       

home
updated Tue Dec 19 09:50:34 2023