interface graph thumbnail
legend  pdf

structure nameARCHITECTURE OF THE RNA POLYMERASE II-MEDIATOR CORE TRANSCRIPTION INITIATION COMPLEX
referencePetrotchenko et al. Nature 518 376 2015
experimentX-ray (resolution=7.80, R-factor=?)
structural superfamilyTATA-box binding protein-like;
sequence familyTranscription factor TFIID or TATAbinding;
multimeric complexes1nh2_AC 1ytf_AC 4v1n_ABMO 4v1o_ABMO 5fmf_1AMPQUV
reference complex1ytb_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureNVFLFVTNVFPLFVT

Estimated binding specificities ?

contactlogo
# IC=6.789 IC/col=0.849 n_of_columns=8 specificity:   
A |  10  96   9  96   0  67  96  15
C |  10   0   9   0   0  11   0  15
G |  10   0  11   0   0   9   0  15
T |  66   0  67   0  96   9   0  51
scan!

home
updated Mon Dec 18 11:25:20 2023