1ytf_AC : 3D-footprint complex

structure name	YEAST TFIIA/TBP/DNA COMPLEX
reference	Richmond et al. Nature 381 127 1996
source	SACCHAROMYCES CEREVISIAE
experiment	X-ray (resolution=2.50, R-factor=?)
structural superfamily	Transcription factor IIA TFIIA, beta-barrel domain;TATA-box binding protein-like;
reference complex	1nh2_C 1ytb_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1ytf_A interface=9,11,39,54,56,62,64,99,101,130,131,145,147,153,155, sgivptlqNiVatvtlgcrldlktvalharnaeynpkrFaavimrirepkttaLiFasgkmVvTgakseddsklasrkyariiqkigfaakftdfkiqNiVgscdvkfpirleglafshgtfssyepelFPgliyrmvkpkivlLiFvsgkiVlTgakqreeiyqafeaiypvlsefrkm > 1ytf_C interface= enlmlclyDkVtrtkarwkcslkdgvvtinrndytfqkAqveaewv
interface signature	NVFLFVTNVFPLFVT/DVA

Estimated binding specificities ?

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# IC=10.364 IC/col=1.036 n_of_columns=10

specificity:

A |   7   0   7   0   1  75   0  96   0  96
C |   7   0   7   7   0   7   0   0   0   0
G |  75   0   7   7   7   7   0   0   0   0
T |   7  96  75  82  88   7  96   0  96   0

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updated Fri Dec 15 11:28:59 2023