| structure name | CRYSTAL STRUCTURE OF A UBX-EXD-DNA COMPLEX INCLUDING THE UBDA MOTIF (HOMEOTIC PROTEIN ULTRABITHORAX) |
| reference | Ortiz-Lombardia et al. Structure 23 270 2015 |
| source | DROSOPHILA MELANOGASTER |
| experiment | X-ray (resolution=2.55, R-factor=0.190) |
| structural superfamily | Homeodomain-like; |
| sequence family | Homeobox domain; |
| multimeric complexes | 4uus_AB 4uus_EF |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | RIQNM |
Estimated binding specificities ?
| contact |  |
A | 9 9 96 0 0 9 C | 11 9 0 0 0 9 G | 9 9 0 0 96 69 T | 67 69 0 96 0 9scan! |
Dendrogram of similar interfaces ?
matrix formatRA------YAQTNAAARG-- L +-----------------------------6wig_A ! RT------IAQCNAYA--RT L ! +1nk2_P ! +--------------2 RT------ITQCNAACRG-- L ! ! +6a8r_A ! +-5 RT------VAQTNA------ L ! ! ! +3lnq_A --9 ! +---------------1 RT------NT--NAITRG-- ! +-6 +5zjt_B ! ! ! RT------VTKGNA--KA-- L ! ! ! +----2lkx_A ! +-----7 +-----------3 ------RCVACTNAQA---- L ! ! ! +----7xrc_C ! ! ! RT----FTYAQTNAATRG-- L +-----8 ! +----6ryd_F ! +------------4 ------RTVAITNAMCRG-- L ! +----1yrn_A ! RTSTVCKGDCRG-------- L +-----------------------1w0t_A |
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updated Thu Dec 22 20:47:40 2022